DNA Binding Motif

						

			
Accessions: MA1902.1 (JASPAR 2024)

			
Names: NFkb
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: vmaaarGGGGAATcCCCctwyy
Weblogo: 
PSSM: P0      A      C      G      T
01    263    258    253    227      v
02    267    253    248    231      m
03    274    247    246    233      a
04    271    242    245    241      a
05    283    243    242    233      a
06    268    215    324    192      r
07    123    100    686     90      G
08     12     10    964     14      G
09     20      8    924     49      G
10    155     19    758     68      G
11    741     51    137     71      A
12    681     56     56    207      A
13    147     99     67    687      T
14     89    658     49    205      c
15     73    877     11     39      C
16     90    843     29     38      C
17     65    788     71     77      C
18    166    428    187    219      c
19    234    243    245    278      t
20    250    247    243    260      w
21    243    255    242    260      y
22    236    257    250    258      y
Type: Heterodimer
Binding TFs: Q4H348 (Ankyrin repeat, Death domain, Rel homology domain (RHD), Ankyrin repeats (3 copies), Ankyrin repeat)
Q4H348
			
Publications: Arizza V, Bonura A, La Paglia L, Urso A, Pinsino A, Vizzini A. Transcriptional and in silico analyses of MIF cytokine and TLR signalling interplay in the LPS inflammatory response of Ciona robusta. Sci Rep 10:11339 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.