DNA Binding Motif
| Accessions: | UP00607B_1 (UniPROBE 20160601) |
| Names: | ESCS, MGC49976, NR2E3_G56R_R1, Nuclear receptor subfamily 2 group E member 3, photoreceptor-specific nuclear receptor, PNR, rd7, Retina-specific nuclear receptor, RNR, RP37 |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 23 |
| Consensus: | rwwagrakGGATCAhryscrgwm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.29 0.06 0.48 0.17 r 02 0.38 0.07 0.17 0.38 w 03 0.38 0.18 0.15 0.28 w 04 0.53 0.10 0.15 0.21 a 05 0.21 0.14 0.55 0.11 g 06 0.38 0.17 0.27 0.18 r 07 0.55 0.21 0.02 0.22 a 08 0.12 0.01 0.58 0.28 k 09 0.02 0.01 0.96 0.01 G 10 0.03 0.01 0.94 0.01 G 11 0.76 0.01 0.22 0.01 A 12 0.01 0.01 0.01 0.97 T 13 0.01 0.94 0 0.05 C 14 0.96 0 0.02 0.01 A 15 0.32 0.35 0.07 0.26 h 16 0.42 0.14 0.36 0.09 r 17 0.19 0.32 0.19 0.31 y 18 0.18 0.32 0.31 0.19 s 19 0.19 0.45 0.24 0.11 c 20 0.48 0.12 0.32 0.09 r 21 0.20 0.17 0.56 0.07 g 22 0.48 0.18 0.07 0.27 w 23 0.32 0.30 0.20 0.18 m |
| Binding TFs: | UP00607B (Zinc finger, C4 type (two domains)) |
| Binding Sites: | AGGGATCA AGGGGTCA AGGGTCAA ATGACCCC ATGATCCC GGGGTCAA GGGTCAAA GGGTCAAC AGGATCAA CGGGATCA CGTGACCC CTTGATCC GGGATCAA GGGATCAC GTGACCCA GTGATCCA TAGGATCA TGATCCAA TGATCCCA TGGATCAA |
| Publications: | Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed] |
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