DNA Binding Motif

						

			
Accessions: 5xxp_AB (3D-footprint 20231221)

			
Names: LysR-type regulatory protein
Organisms: Cupriavidus necator, Cupriavidus necator (Alcaligenes eutrophus)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of CbnR_DBD-DNA complex
Length: 19
Consensus: TtACgnnnnncGTAAnnnT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     21     15      0     60      t
03     96      0      0      0      A
04      0     96      0      0      C
05     18     21     51      6      g
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     18     51     21      6      c
12      0      0     96      0      G
13      0      0      3     93      T
14     96      0      0      0      A
15     75      0      0     21      A
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19      0      0      0     96      T
Binding TFs: 5xxp_A / 5xxp_B (Bacterial regulatory helix-turn-helix protein, lysR family)
Binding Sites: 5xxp_E
5xxp_F
			
Publications: Koentjoro MP, Adachi N, Senda M, Ogawa N, Senda T. Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region. FEBS J 285:977-989 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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