DNA Binding Motif

						

			
Accessions: MA0941.1 (JASPAR 2024)

			
Names: ABF2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 13
Consensus: cayrACACGTgkt
Weblogo: 
PSSM: P0      A      C      G      T
01    231    308    231    231      c
02    308    231    231    231      a
03    191    268    191    350      y
04    274    120    403    202      r
05    699    177    103     21      A
06      0    840      0    159      C
07    999      0      0      0      A
08      0    917      0     82      C
09     19     19    942     19      G
10     19     19     19    942      T
11    218     59    664     59      g
12    213    130    287    371      k
13    229    229    229    312      t
Type: Heterodimer
Binding TFs: Q9M7Q4 (bZIP transcription factor, Basic region leucine zipper)
Q9M7Q4
Binding Sites: MA0941.1.1
MA0941.1.10
MA0941.1.11
MA0941.1.12
MA0941.1.13
MA0941.1.14
MA0941.1.15
MA0941.1.16
MA0941.1.17
MA0941.1.18
MA0941.1.19
MA0941.1.2 / MA0941.1.4
MA0941.1.20
MA0941.1.3
MA0941.1.5
MA0941.1.6
MA0941.1.7
MA0941.1.8
MA0941.1.9
			
Publications: Uno Y, Furihata T, Abe H, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc Natl Acad Sci U S A 97:11632-7 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.