DNA Binding Motif

						

			
Accessions: MA1870.1 (JASPAR 2024)

			
Names: FoxL2
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: awwwawaTAAACAaamamam
Weblogo: 
PSSM: P0      A      C      G      T
01    339    228    185    248      a
02    342    224    155    280      w
03    400    162    155    283      w
04    420    147     75    358      w
05    506    141    135    217      a
06    345    248     97    311      w
07    547     91    183    179      a
08    115    168     10    707      T
09    961     17      6     16      A
10    833    106      5     56      A
11    957      8     21     14      A
12     19    867      6    108      C
13    951     13     12     24      A
14    523    176     67    234      a
15    448    196    122    235      a
16    315    339    142    204      m
17    428    220    147    204      a
18    338    282    153    227      m
19    350    247    161    242      a
20    338    262    163    237      m
Type: Heterodimer
Binding TFs: Q4H3I1 (Fork head domain)
Q4H3I1
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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