DNA Binding Motif

						

			
Accessions: 1hjc_D (3D-footprint 20231221)

			
Names: RUNT-RELATED TRANSCRIPTION FACTOR 1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Length: 8
Consensus: CaaCCACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0     84      0     12      C
02     64     12     12      8      a
03     51     12     19     14      a
04      0     96      0      0      C
05      0     96      0      0      C
06     96      0      0      0      A
07      0     96      0      0      C
08     76      6      8      6      A
Binding TFs: 1hjc_D (Runt domain)
Binding Sites: 1hjc_E
1hjc_F
			
Publications: Tahirov T.H, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K. Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta. Cell 104:755-67 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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