DNA Binding Motif
| Accessions: | MA2439.1 (JASPAR 2024) |
| Names: | SPL2A |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | GCGGTAsTACCGC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 13241 7225 61806 3073 G 02 2540 72225 2140 8440 C 03 5899 2290 74736 2420 G 04 2135 1185 80408 1617 G 05 2163 3294 558 79330 T 06 80594 1438 1178 2135 A 07 532 33150 51121 542 s 08 1778 1518 554 81495 T 09 80353 457 2795 1740 A 10 613 80130 2687 1915 C 11 2494 73171 2779 6901 C 12 7607 2342 73386 2010 G 13 1230 68230 4773 11112 C |
| Binding Sites: | MA2439.1.11 / MA2439.1.2 / MA2439.1.9 MA2439.1.5 MA2439.1.6 MA2439.1.17 MA2439.1.18 MA2439.1.3 MA2439.1.4 MA2439.1.7 MA2439.1.1 MA2439.1.10 MA2439.1.12 MA2439.1.13 MA2439.1.14 MA2439.1.15 MA2439.1.16 MA2439.1.19 MA2439.1.20 MA2439.1.8 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.