DNA Binding Motif
| Accessions: | 3pvv_B (3D-footprint 20231221) |
| Names: | Chromosomal replication initiator protein dnaA |
| Organisms: | Mycobacterium tuberculosis, strain ATCC 25177 / H37Ra |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA |
| Length: | 9 |
| Consensus: | wTGknCmCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 25 1 5 65 w 02 0 0 0 96 T 03 0 0 90 6 G 04 16 20 25 35 k 05 24 24 24 24 n 06 0 96 0 0 C 07 65 25 0 6 m 08 0 96 0 0 C 09 96 0 0 0 A |
| Binding TFs: | 3pvv_B (Bacterial dnaA protein helix-turn-helix) |
| Binding Sites: | 3pvv_E 3pvv_F |
| Publications: | Tsodikov O.V, Biswas T. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. Journal of molecular biology 410:461-76 (2011). [Pubmed] |
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