DNA Binding Motif

						

			
Accessions: EEAD0006 (EEADannot 2023-12-22)

			
Names: VRN1
Organisms: Hordeum vulgare cv Strider
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 10
Consensus: CCarAAAwGG
Weblogo: 
PSSM: P0      A      C      G      T
01  0.186  0.715  0.070  0.027      C
02  0.101  0.706  0.075  0.116      C
03  0.570  0.173  0.140  0.116      a
04  0.562  0.064  0.311  0.062      r
05  0.947  0.017  0.035  0.000      A
06  0.842  0.011  0.029  0.116      A
07  0.787  0.073  0.068  0.070      A
08  0.573  0.033  0.093  0.299      w
09  0.241  0.000  0.758  0.000      G
10  0.147  0.000  0.850  0.001      G
Binding TFs: VRN1 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
			
Publications: Deng W, Casao Mc, Wang P, Sato K, Hayes PM, Jean Finnegan E, Trvaskis B (2015) Direct links between the vernalization response and other key traits of cereal crops. Nat Comm 6:5882 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.