DNA Binding Motif
Accessions: | MA1880.1 (JASPAR 2024) |
Names: | Hey |
Organisms: | Ciona intestinalis |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | SELEX |
Length: | 22 |
Consensus: | sssssgrCACGTGccvcsbsss |
Weblogo: | |
PSSM: | P0 A C G T 01 230 300 262 208 s 02 242 284 262 211 s 03 246 278 262 214 s 04 231 267 283 220 s 05 210 270 276 243 s 06 158 203 475 163 g 07 303 176 385 135 r 08 27 921 26 26 C 09 871 22 86 22 A 10 15 931 17 37 C 11 35 24 922 19 G 12 19 85 16 879 T 13 33 28 911 29 G 14 94 554 119 233 c 15 125 642 132 101 c 16 264 268 257 211 v 17 219 294 245 242 c 18 212 265 278 245 s 19 205 271 270 255 b 20 208 270 299 223 s 21 213 280 279 228 s 22 213 279 277 231 s |
Type: | Heterodimer |
Binding TFs: | Q4H3E4 (Helix-loop-helix DNA-binding domain, Hairy Orange) Q4H3E4 |
Publications: | José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.