DNA Binding Motif
| Accessions: | MA0551.2 (JASPAR 2024) |
| Names: | HY5 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-chip |
| Length: | 12 |
| Consensus: | tGmCACGTGkCa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 52 55 30 183 t 02 9 8 279 24 G 03 150 165 1 4 m 04 0 317 1 2 C 05 310 1 9 0 A 06 3 311 5 1 C 07 1 5 311 3 G 08 0 9 1 310 T 09 2 1 317 0 G 10 4 1 165 150 k 11 24 279 8 9 C 12 183 30 55 52 a |
| Type: | Heterodimer |
| Binding TFs: | O24646 (bZIP transcription factor, Basic region leucine zipper) O24646 |
| Publications: | Song Y. H., Yoo C. M., Hong A. P., Kim S. H., Jeong H. J., Shin S. Y., Kim H. J., Yun D. J., Lim C. O., Bahk J. D., Lee S. Y., Nagao R. T., Key J. L., Hong J. C. DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins.. Plant Physiol. 146:1862-1877 (2008). [Pubmed] |
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