DNA Binding Motif

						

			
Accessions: UN0444.1 (JASPAR 2024)

			
Names: Cdx
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: wwwwwdwTTTATtGckkkdwdd
Weblogo: 
PSSM: P0      A      C      G      T
01    277    195    218    310      w
02    279    197    225    299      w
03    286    202    228    285      w
04    264    207    239    290      w
05    267    213    233    287      w
06    285    198    257    259      d
07    284    145    231    340      w
08     92     27     47    834      T
09     90     16     19    876      T
10    131     13     28    828      T
11    966      6     13     15      A
12     37     42     26    894      T
13     93     19    230    658      t
14    201     20    740     39      G
15     85    600    148    167      c
16    218    244    279    260      k
17    203    231    298    268      k
18    218    199    269    313      k
19    281    181    255    282      d
20    282    174    249    295      w
21    288    167    250    295      d
22    298    161    262    279      d
Type: Heterodimer
Binding TFs: Q4H3T1 (Homeobox domain)
Q4H3T1
			
	
			


			

				

				
				
				
				

			

			

		

	
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