DNA Binding Motif

						

			
Accessions: 4roc_AB (3D-footprint 20231221)

			
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter
Length: 15
Consensus: GGnnTTAAAATAnGT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      5      1     90      0      G
03     24     24     24     24      n
04     24     24     24     24      n
05      1      5      0     90      T
06      0      0      0     96      T
07     96      0      0      0      A
08     96      0      0      0      A
09     96      0      0      0      A
10     79      7      5      5      A
11      0      0      0     96      T
12     79      5      5      7      A
13     24     24     24     24      n
14     11     13     67      5      G
15      5     11      5     75      T
Binding TFs: 4roc_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 4roc_N
4roc_T
			
Publications: Gouge J, Satia K, Guthertz N, Widya M, Thompson AJ, Cousin P, Dergai O, Hernandez N, Vannini A. Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell 163:1375-87 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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