DNA Binding Motif

						

			
Accessions: MA1912.1 (JASPAR 2024)

			
Names: Six3/6
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wtgwawwTGATACssywhwh
Weblogo: 
PSSM: P0      A      C      G      T
01    260    242    222    276      w
02    227    206    248    320      t
03    225    185    348    242      g
04    325    181    174    320      w
05    413    195    159    234      a
06    409    187    145    258      w
07    309    175    208    308      w
08     38     86     42    833      T
09     52     26    890     33      G
10    964     10      9     17      A
11     21     51      9    919      T
12    930     49     12      9      A
13     21    710     72    196      C
14    177    351    290    182      s
15    190    302    265    244      s
16    242    264    234    259      y
17    267    212    184    337      w
18    307    255    172    266      h
19    298    247    186    270      w
20    268    265    203    264      h
			
Publications: Kumar JP. The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease. Cell Mol Life Sci 66:565-83 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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