DNA Binding Motif

						

			
Accessions: MA0162.5 (JASPAR 2024)

			
Names: EGR1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 10
Consensus: mCGCCCACgC
Weblogo: 
PSSM: P0      A      C      G      T
01  14508  10303   3854   1933      m
02    642  28403    756    797      C
03   5110   1131  22237   2120      G
04    227  29338    665    368      C
05   1440  27321   1455    382      C
06    314  28958    698    628      C
07  22297   5420   2122    759      A
08    153  29507    699    239      C
09   4696   2806  20544   2552      g
10    969  25196   2157   2276      C
Type: Heterodimer
Binding TFs: P18146 (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger)
P18146
Binding Sites: MA0162.5.1
MA0162.5.10 / MA0162.5.11 / MA0162.5.12
MA0162.5.13 / MA0162.5.5 / MA0162.5.6 / MA0162.5.7
MA0162.5.14
MA0162.5.15
MA0162.5.16
MA0162.5.17
MA0162.5.18
MA0162.5.19
MA0162.5.2
MA0162.5.20
MA0162.5.3
MA0162.5.4
MA0162.5.8 / MA0162.5.9
			
Publications: Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.