DNA Binding Motif

						

			
Accessions: EGR1_2 (HT-SELEX2 May2017)

			
Names: EGR1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 13
Consensus: cmCrCCCmCgCmm
Weblogo: 
PSSM: P0      A      C      G      T
01   1507   2433    966   1192      c
02   2701   3396   1023   1031      m
03    801   6097    507    883      C
04   3902   1084   6097   1408      r
05     97   6097     12     61      C
06    195   6097    113    129      C
07    438   6097     82   1257      C
08   6097   3439    434    281      m
09      2   6097     13     70      C
10   1773   1324   6097    940      g
11    593   6097    408   1034      C
12   3594   2504   2151   1563      m
13   1561   2482    929   1126      m
Binding TFs: EGR1 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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