DNA Binding Motif
| Accessions: | MA1814.1 (JASPAR 2024) |
| Names: | RIN |
| Organisms: | Solanum lycopersicum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 15 |
| Consensus: | wwcTATTTTTGGgww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1259 576 683 2305 w 02 1295 689 719 2120 w 03 682 3258 246 637 c 04 235 573 85 3930 T 05 3927 239 87 570 A 06 248 163 98 4314 T 07 469 70 55 4229 T 08 203 33 50 4537 T 09 357 58 99 4309 T 10 285 65 143 4330 T 11 331 32 4270 190 G 12 265 110 3924 524 G 13 1089 525 2029 1180 g 14 1882 765 670 1506 w 15 1945 689 680 1509 w |
| Type: | Heterodimer |
| Binding TFs: | Q8S4L4 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region) Q8S4L4 |
| Binding Sites: | MA1814.1.1 / MA1814.1.2 MA1814.1.10 / MA1814.1.17 MA1814.1.11 / MA1814.1.19 MA1814.1.12 MA1814.1.13 MA1814.1.14 MA1814.1.15 MA1814.1.16 MA1814.1.17 MA1814.1.18 MA1814.1.19 MA1814.1.2 / MA1814.1.3 MA1814.1.20 MA1814.1.3 / MA1814.1.4 MA1814.1.4 / MA1814.1.5 MA1814.1.5 / MA1814.1.9 MA1814.1.10 / MA1814.1.6 MA1814.1.12 / MA1814.1.7 MA1814.1.14 / MA1814.1.8 MA1814.1.15 / MA1814.1.9 MA1814.1.1 MA1814.1.11 MA1814.1.13 MA1814.1.16 MA1814.1.18 MA1814.1.20 MA1814.1.6 MA1814.1.7 MA1814.1.8 |
| Publications: | Ito Y., Kitagawa M., Ihashi N., Yabe K., Kimbara J., Yasuda J., Ito H., Inakuma T., Hiroi S., Kasumi T. DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN.. Plant J. 55:212-223 (2008). [Pubmed] |
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