DNA Binding Motif

						

			
Accessions: M0451 (AthalianaCistrome v4_May2016), MA1667.1 (JASPAR 2024)

			
Names: HSFC1.DAP, T15276;, HSFC1
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: CTAGAAgcTTC
Weblogo: 
PSSM: P0      A      C      G      T
01      0    599      0      1      C
02      0    102     15    483      T
03    516     19     65      0      A
04      0      3    597      0      G
05    588      2      0     10      A
06    538      1     18     43      A
07    123     98    241    138      g
08     70    363    127     40      c
09     36      1      0    563      T
10      6      0      0    594      T
11      0    600      0      0      C
Type: Heterodimer
Binding TFs: Q9LV52 / T15276 (HSF-type DNA-binding, Interferon-induced 35 kDa protein (IFP 35) N-terminus)
Q9LV52
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]


Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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