DNA Binding Motif

						

			
Accessions: 6y42_AB (3D-footprint 20231221)

			
Names: Rrf2 family transcriptional regulator
Organisms: strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745, Streptomyces venezuelae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of RsrR complexed to a 39 basepair DNA fragment of the rsrR promoter
Length: 22
Consensus: ACTcGGATAnnnnnTGTCCGAG
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      7     70      7     12      C
03     11     10      5     70      T
04     11     65     10     10      c
05      2      2     90      2      G
06      0      0     93      3      G
07     96      0      0      0      A
08      0      0      0     96      T
09     96      0      0      0      A
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15      2      4      2     88      T
16      0      0     96      0      G
17      0      0      0     96      T
18      0     96      0      0      C
19      0     96      0      0      C
20      7      5     75      9      G
21     90      2      2      2      A
22      2      2     88      4      G
Binding TFs: 6y42_A / 6y42_B (Transcriptional regulator, Winged helix-turn-helix transcription repressor, HrcA DNA-binding)
Binding Sites: 6y42_E
6y42_F
			
Publications: Crack JC, Amara P, Volbeda A, Mouesca JM, Rohac R, Pellicer Martinez MT, Huang CY, Gigarel O, Rinaldi C, Le Brun NE, Fontecilla-Camps JC. Electron and Proton Transfers Modulate DNA Binding by the Transcription Regulator RsrR. J Am Chem Soc 142:5104-5116 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.