DNA Binding Motif

						

			
Accessions: MA1159.2 (JASPAR 2024)

			
Names: SGR5
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: raAwAAGACAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01    343     57    160     40      r
02    340     48    116     96      a
03    433      0     44    123      A
04    310     16     27    247      w
05    486     22     92      0      A
06    532      4     22     42      A
07     33      0    566      1      G
08    591      6      0      3      A
09      0    599      1      0      C
10    592      1      7      0      A
11    598      1      0      1      A
12    560     10     11     19      A
13    428     34     21    117      A
Type: Heterodimer
Binding TFs: F4IPE3
F4IPE3
Binding Sites: MA1159.2.1
MA1159.2.10
MA1159.2.11
MA1159.2.12
MA1159.2.13
MA1159.2.14
MA1159.2.15
MA1159.2.16
MA1159.2.17
MA1159.2.18
MA1159.2.19
MA1159.2.2
MA1159.2.20
MA1159.2.3
MA1159.2.4
MA1159.2.5
MA1159.2.6
MA1159.2.7
MA1159.2.8
MA1159.2.9
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.