DNA Binding Motif

						

			
Accessions: 2drp_D (3D-footprint 20231221)

			
Names: PROTEIN (TRAMTRACK DNA-BINDING DOMAIN)
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION
Length: 8
Consensus: rAGGATaa
Weblogo: 
PSSM: P0      A      C      G      T
01     39     21     24     12      r
02     94      1      1      0      A
03      1      0     95      0      G
04      0      0     95      1      G
05     96      0      0      0      A
06      5     19      6     66      T
07     65     12     10      9      a
08     60     13     12     11      a
Binding TFs: 2drp_D (Zinc finger, C2H2 type, C2H2-type zinc finger)
Binding Sites: 2drp_E
2drp_F
			
Publications: Fairall L, Schwabe J.W, Chapman L, Finch J.T, Rhodes D. The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition. Nature 366:483-7 (1993). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.