DNA Binding Motif

						

			
Accessions: 1r8d_AB (3D-footprint 20231221)

			
Names: transcription activator MtaN
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of MtaN Bound to DNA
Length: 19
Consensus: CnnnnACGTnGCGTnannG
Weblogo: 
PSSM: P0      A      C      G      T
01     11     69      8      8      C
02     24     24     24     24      n
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     96      0      0      0      A
07      0     96      0      0      C
08      0      0     96      0      G
09      8      8     11     69      T
10     24     24     24     24      n
11      8      8     72      8      G
12      0     96      0      0      C
13      0      0     96      0      G
14      0      0      0     96      T
15     24     24     24     24      n
16     56     13     14     13      a
17     24     24     24     24      n
18     24     24     24     24      n
19      4      4     82      6      G
Type: Heterodimer
Binding TFs: 1r8d_A (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
1r8d_B (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 1r8d_C
1r8d_D
			
Publications: Newberry K.J, Brennan R.G. The structural mechanism for transcription activation by MerR family member multidrug transporter activation, N terminus. The Journal of biological chemistry 279:20356-62 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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