DNA Binding Motif

						

			
Accessions: VSX1_methyl_2 (HT-SELEX2 May2017)

			
Names: VSX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: ctCrTTAw
Weblogo: 
PSSM: P0      A      C      G      T
01    986   2220    880   1263      c
02   1282    493   1871   5349      t
03    787   5349    523    733      C
04   4799     37   5349      0      r
05    228    265    177   5349      T
06    621    170     98   5349      T
07   5349      0     54      0      A
08   1474   1204   1234   1436      w
Binding TFs: VSX1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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