DNA Binding Motif

						

			
Accessions: EEAD0613 (EEADannot 2026-03-04)

			
Names: Carub.0005s0004.1_G2LIKE_1_AT2G01060
Organisms: Capsella rubella
Libraries: EEADannot 2026-03-04 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 15
Consensus: adraarGAATATTCy
Weblogo: 
PSSM: P0      A      C      G      T
01  0.486  0.171  0.099  0.243      a
02  0.396  0.036  0.252  0.315      d
03  0.568  0.054  0.261  0.117      r
04  0.667  0.036  0.135  0.162      a
05  0.568  0.054  0.180  0.198      a
06  0.514  0.090  0.396  0.000      r
07  0.000  0.000  0.991  0.009      G
08  0.892  0.063  0.000  0.045      A
09  1.000  0.000  0.000  0.000      A
10  0.000  0.000  0.000  1.000      T
11  0.955  0.045  0.000  0.000      A
12  0.000  0.000  0.000  1.000      T
13  0.171  0.045  0.081  0.703      T
14  0.045  0.874  0.000  0.081      C
15  0.000  0.423  0.144  0.432      y
Binding TFs: Carub.0005s0004.1.p (Myb-like DNA-binding domain, MYB-CC type transfactor, LHEQLE motif)
			
Publications: Baumgart LA, Greenblum SI, Morales-Cruz A, Wang P, Zhang Y, Yang L, Chen C, Dilworth DJ, Garretson AC, Grosjean N, He G, Savage E, Yoshinaga Y, Blaby IK, Daum CG, O'Malley RC. Recruitment, rewiring and deep conservation in flowering plant gene regulation. Nat Plants 11:1514-1527 (2025). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.