DNA Binding Motif
| Accessions: | UP00299A_1 (UniPROBE 20160601) |
| Names: | LPI16C, Protein TBF1, TBF alpha, Tbf1, TTAGGG repeat-binding factor 1, YPL128C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | yyysgwARCCCTAAyacgsm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.26 0.09 0.43 y 02 0.15 0.33 0.18 0.33 y 03 0.24 0.26 0.24 0.25 y 04 0.18 0.34 0.25 0.23 s 05 0.12 0.24 0.41 0.23 g 06 0.31 0.18 0.06 0.45 w 07 0.96 0 0.01 0.03 A 08 0.71 0 0.29 0 R 09 0.03 0.97 0 0 C 10 0 0.99 0 0 C 11 0 0.99 0 0.01 C 12 0 0.02 0 0.98 T 13 0.98 0.01 0.02 0 A 14 0.83 0.01 0.06 0.10 A 15 0.19 0.31 0.10 0.41 y 16 0.39 0.15 0.23 0.23 a 17 0.22 0.37 0.23 0.17 c 18 0.14 0.22 0.43 0.21 g 19 0.22 0.33 0.25 0.19 s 20 0.27 0.29 0.23 0.21 m |
| Binding TFs: | UP00299A (Myb-like DNA-binding domain, Myb-like DNA-binding domain) |
| Binding Sites: | AAACCCTA AACCCTAA AACCCTAC AACCCTAG AACCCTAT AAGCCCTA ACCCTAAT AGCCCTAA AGCCCTAG CAACCCTA CAGCCCTA GAACCCTA GAGCCCTA TAACCCTA TACCCTAA TAGCCCTA AACCCTGA AGCCCTAT AGGGTTGG TGCCCTAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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