DNA Binding Motif

						

			
Accessions: HNF4A_methyl_4 (HT-SELEX2 May2017)

			
Names: HNF4A
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 15
Consensus: rrGTCCAAAGGTCRh
Weblogo: 
PSSM: P0      A      C      G      T
01   1789    387   3024    313      r
02   2513     40   3002     72      r
03     20      9   5514     53      G
04     19      9    137   5514      T
05    992   5514    538    956      C
06     60   5514     21    107      C
07   5514      4    384     11      A
08   5514      7      7     26      A
09   5514     13     77      5      A
10      5      1   5514      5      G
11     25      3   5514    483      G
12      5     25    152   5514      T
13     12   5514     54    381      C
14   3885     23   1630     38      R
15   1479   1630    938   1468      h
Binding TFs: HNF4A (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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