DNA Binding Motif

						

			
Accessions: RARG_methyl_2 (HT-SELEX2 May2017)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 14
Consensus: rAGGTCrYGAMCTy
Weblogo: 
PSSM: P0      A      C      G      T
01    695    163    568    188      r
02   1201     76    413     10      A
03     28     24   1614     65      G
04     11      0   1614    528      G
05    160    122    228   1614      T
06      8   1614      0     22      C
07    565      0   1049      6      r
08      2    616      0   1614      Y
09     18      0   1614      3      G
10   1614    142     70     94      A
11    540   1614      5      0      M
12     39   1614      5     39      C
13     21    359    106   1255      T
14    211    477    191    735      y
Binding TFs: RARG (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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