DNA Binding Motif
| Accessions: | MA1692.1 (JASPAR 2024) |
| Names: | ARF29 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | cmtwGCCGACAAvrw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1242 1455 1310 1234 c 02 1450 1357 1244 1190 m 03 1269 1239 1117 1616 t 04 1475 1102 1278 1386 w 05 468 468 3994 311 G 06 200 4649 147 245 C 07 576 4459 116 90 C 08 83 16 5091 51 G 09 5053 43 120 25 A 10 16 5154 36 35 C 11 4801 289 121 30 A 12 3983 329 602 327 A 13 1531 1370 1531 809 v 14 1598 1242 1396 1005 r 15 1622 1206 988 1425 w |
| Type: | Heterodimer |
| Binding TFs: | D9HNV6 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV6 |
| Binding Sites: | MA1692.1.1 MA1692.1.10 MA1692.1.11 MA1692.1.12 / MA1692.1.3 MA1692.1.13 / MA1692.1.4 MA1692.1.14 MA1692.1.15 / MA1692.1.5 MA1692.1.16 / MA1692.1.6 MA1692.1.17 MA1692.1.18 / MA1692.1.7 MA1692.1.19 / MA1692.1.8 MA1692.1.1 / MA1692.1.2 MA1692.1.20 / MA1692.1.9 MA1692.1.3 MA1692.1.2 / MA1692.1.4 MA1692.1.5 MA1692.1.6 MA1692.1.7 MA1692.1.8 MA1692.1.9 MA1692.1.10 MA1692.1.11 MA1692.1.12 MA1692.1.13 MA1692.1.14 MA1692.1.15 MA1692.1.16 MA1692.1.17 MA1692.1.18 MA1692.1.19 MA1692.1.20 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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