DNA Binding Motif

						

			
Accessions: 1f2i_KL (3D-footprint 20231221)

			
Names: FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
Length: 12
Consensus: tGGGCGCGCCCa
Weblogo: 
PSSM: P0      A      C      G      T
01     13     16     13     54      t
02      0      0     96      0      G
03      0      0     96      0      G
04      0      0     96      0      G
05      0     96      0      0      C
06      0      0     96      0      G
07      0     96      0      0      C
08      0      0     96      0      G
09      0     96      0      0      C
10      0     96      0      0      C
11      0     96      0      0      C
12     54     16     13     13      a
Type: Heterodimer
Binding TFs: 1f2i_L (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
1f2i_K (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1f2i_E / 1f2i_F
			
Publications: Wang B.S, Grant R.A, Pabo C.O. Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA. Nature structural biology 8:589-93 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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