DNA Binding Motif

						

			
Accessions: EEAD0144 (EEADannot 2025-01-07)

			
Names: STOP1
Organisms: Arabidopsis thaliana
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 17
Consensus: sRGrvArrhyhTwhsYb
Weblogo: 
PSSM: P0      A      C      G      T
01      1      3      4      0      s
02      2      0      6      0      R
03      0      1      7      0      G
04      4      0      4      0      r
05      3      2      2      1      v
06      7      1      0      0      A
07      2      0      5      1      r
08      3      0      5      0      r
09      3      2      1      2      h
10      0      4      1      3      y
11      2      3      0      3      h
12      1      1      0      6      T
13      5      1      0      2      w
14      2      2      0      4      h
15      1      5      2      0      s
16      0      2      0      6      Y
17      1      2      3      2      b
Binding TFs: STOP1 (Zinc finger, C2H2 type)
			
Publications: Tokizawa M, Enomoto T, Chandnani R, Mora-Macias J, Burbridge C, Armenta-Medina A, Kobayashi Y, Yamamoto YY, Koyama H, Kochian LV. The transcription factors, STOP1 and TCP20, are required for root system architecture alterations in response to nitrate deficiency. Proc Natl Acad Sci U S A : (2023). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.