DNA Binding Motif

						

			
Accessions: MA1768.2 (JASPAR 2024)

			
Names: MYB30
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 12
Consensus: cCAACyACCamc
Weblogo: 
PSSM: P0      A      C      G      T
01    180    537     67    215      c
02     12    843      0    145      C
03    983     15      0      2      A
04    880    103      3     13      A
05      0   1000      0      0      C
06     62    525     22    391      y
07    764     12    173     51      A
08    167    744      0     89      C
09     86    682      0    232      C
10    616     79     57    247      a
11    402    384     45    168      m
12    162    613     45    180      c
Type: Heterodimer
Binding TFs: Q9SCU7 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9SCU7
			
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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