DNA Binding Motif

						

			
Accessions: 2e1c_A (3D-footprint 20231221)

			
Names: Putative HTH-type transcriptional regulator PH1519
Organisms: Pyrococcus horikoshii, strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Putative HTH-type transcriptional regulator PH1519/DNA Complex
Length: 5
Consensus: TTTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      9     11      9     67      T
02     11      9      9     67      T
03      9     11      9     67      T
04      0     96      0      0      C
05     96      0      0      0      A
Binding TFs: 2e1c_A (Bacterial regulatory protein, arsR family, AsnC family, AsnC-type helix-turn-helix domain, Winged helix-turn-helix DNA-binding)
Binding Sites: 2e1c_B
2e1c_D
			
Publications: Yokoyama K, Ishijima S.A, Koike H, Kurihara C, Shimowasa A, Kabasawa M, Kawashima T, Suzuki M. Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3. Structure (London, England : 1993) 15:1542-54 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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