DNA Binding Motif

						

			
Accessions: ERF_CEBPD (HumanTF2 1.0), UN0505.1 (JASPAR 2024)

			
Names: ERF_CEBPD, ERF::CEBPD
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1, JASPAR 2024 2
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX, HT-SELEX
Length: 17
Consensus: rsmGGAwrTTGCGyAAy
Weblogo: 
PSSM: P0      A      C      G      T
01    782    270    667    517      r
02    479    662    786    191      s
03    464    984    127     21      m
04      1      5   1448      4      G
05      8      5   1448      0      G
06   1448      0     14     62      A
07   1448    225     38   1037      w
08    762     51    636      0      r
09      0      0      0   1448      T
10     10     13     20   1448      T
11    461     18   1448    110      G
12      2   1448     11     67      C
13    101      6   1448      4      G
14    204    980      4    468      y
15   1448    203      1      1      A
16   1448      0      0      3      A
17     48    483    254    663      y
Type: Heterodimer
Binding TFs: CEBPD_TF2 (bZIP transcription factor, Basic region leucine zipper)
ERF_TF1 (Ets-domain)
P50548 (Ets-domain)
P50548
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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