DNA Binding Motif
| Accessions: | MA1069.1 (JASPAR 2024) |
| Names: | TGA6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | PBM |
| Length: | 10 |
| Consensus: | kaTGACGTma |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 210 210 330 251 k 02 428 211 209 152 a 03 0 0 0 1000 T 04 0 0 1000 0 G 05 1000 0 0 0 A 06 0 1000 0 0 C 07 0 0 1000 0 G 08 0 0 0 1000 T 09 277 599 84 40 m 10 665 98 138 98 a |
| Type: | Heterodimer |
| Binding TFs: | Q39140 (bZIP transcription factor, Basic region leucine zipper, Seed dormancy control) Q39140 |
| Binding Sites: | MA1069.1.2 MA1069.1.4 MA1069.1.18 MA1069.1.5 MA1069.1.3 MA1069.1.14 MA1069.1.1 MA1069.1.17 MA1069.1.7 MA1069.1.16 MA1069.1.6 MA1069.1.13 MA1069.1.12 MA1069.1.9 MA1069.1.11 MA1069.1.10 MA1069.1.15 MA1069.1.19 MA1069.1.20 MA1069.1.8 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.