DNA Binding Motif

						

			
Accessions: 2o93_LMO (3D-footprint 20231221)

			
Names: actor of activated T-cells, cytoplasmic 2
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element
Length: 24
Consensus: GGGAnnTTCCGnnnnnnnnnTTCC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0     96      0      G
03      0      0     96      0      G
04     73      7      9      7      A
05     24     24     24     24      n
06     24     24     24     24      n
07      7      7      7     75      T
08      0      0      0     96      T
09      0     96      0      0      C
10      0     96      0      0      C
11      7      7     75      7      G
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15     24     24     24     24      n
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19     24     24     24     24      n
20     24     24     24     24      n
21      7      7      7     75      T
22      0      0      0     96      T
23      0     96      0      0      C
24      0     96      0      0      C
Type: Heterodimer
Binding TFs: 2o93_M (Rel homology domain (RHD), IPT/TIG domain)
2o93_L / 2o93_O (Rel homology domain (RHD), IPT/TIG domain)
Binding Sites: 2o93_A
2o93_B
			
Publications: Bates D.L, Barthel K.K, Wu Y, Kalhor R, Stroud J.C, Giffin M.J, Chen L. Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element. Structure (London, England : 1993) 16:684-94 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.