DNA Binding Motif
| Accessions: | MA1673.1 (JASPAR 2024) |
| Names: | LBD18 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | tcGCCGGAAAww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1364 1402 922 2177 t 02 1382 2201 833 1449 c 03 501 245 4833 286 G 04 122 5323 290 130 C 05 228 5168 316 153 C 06 128 40 5531 166 G 07 105 171 5338 251 G 08 5373 93 159 240 A 09 3997 191 1009 668 A 10 4330 472 384 679 A 11 2258 1201 671 1735 w 12 1519 1189 1247 1910 w |
| Type: | Heterodimer |
| Binding TFs: | O22131 (Protein of unknown function DUF260) O22131 |
| Binding Sites: | MA1673.1.1 MA1673.1.10 / MA1673.1.5 MA1673.1.11 / MA1673.1.6 MA1673.1.12 / MA1673.1.8 MA1673.1.13 / MA1673.1.9 MA1673.1.10 / MA1673.1.14 MA1673.1.15 MA1673.1.13 / MA1673.1.16 MA1673.1.15 / MA1673.1.17 MA1673.1.16 / MA1673.1.18 MA1673.1.17 / MA1673.1.19 MA1673.1.2 MA1673.1.18 / MA1673.1.20 MA1673.1.3 MA1673.1.4 MA1673.1.2 / MA1673.1.5 MA1673.1.6 MA1673.1.3 / MA1673.1.7 MA1673.1.8 MA1673.1.4 / MA1673.1.9 MA1673.1.11 MA1673.1.12 MA1673.1.14 MA1673.1.19 MA1673.1.20 MA1673.1.7 |
| Publications: | Pandey SK, Lee HW, Kim MJ, Cho C, Oh E, Kim J. LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis. Plant J 95:233-251 (2018). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.