DNA Binding Motif
| Accessions: | MA0508.3 (JASPAR 2024) |
| Names: | PRDM1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 11 |
| Consensus: | ywCTTTCTCty |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 8762 17788 6638 22293 y 02 17153 12288 8768 17272 w 03 1199 52752 701 829 C 04 1283 467 826 52905 T 05 2181 1346 1011 50943 T 06 1813 488 561 52619 T 07 1377 53465 207 432 C 08 3549 1076 1390 49466 T 09 1710 52821 290 660 C 10 10522 13567 4098 27294 t 11 10124 17518 7861 19978 y |
| Type: | Heterodimer |
| Binding TFs: | O75626 (Zinc finger, C2H2 type, SET domain, Zinc-finger double domain, C2H2-type zinc finger) O75626 |
| Binding Sites: | MA0508.3.1 MA0508.3.10 MA0508.3.11 / MA0508.3.4 MA0508.3.12 / MA0508.3.5 MA0508.3.13 MA0508.3.14 / MA0508.3.6 MA0508.3.15 MA0508.3.16 MA0508.3.17 MA0508.3.18 MA0508.3.19 MA0508.3.1 / MA0508.3.2 MA0508.3.20 / MA0508.3.7 MA0508.3.3 MA0508.3.2 / MA0508.3.4 MA0508.3.5 MA0508.3.6 MA0508.3.3 / MA0508.3.7 MA0508.3.8 MA0508.3.9 MA0508.3.10 MA0508.3.11 MA0508.3.12 MA0508.3.13 MA0508.3.14 MA0508.3.15 MA0508.3.16 MA0508.3.17 MA0508.3.18 MA0508.3.19 MA0508.3.20 MA0508.3.8 MA0508.3.9 |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.