DNA Binding Motif

						

			
Accessions: RARA_methyl_1 (HT-SELEX2 May2017)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: rrGGtCRarrGGTCRm
Weblogo: 
PSSM: P0      A      C      G      T
01    432    163    564    264      r
02    869    127    553     65      r
03     33     36   1423    109      G
04      3      0   1423    202      G
05    119     82    478   1423      t
06     38   1423    264    128      C
07   1423     12    612     36      R
08    526    307    257    333      a
09    496    123    606    198      r
10    819     96    604     65      r
11     16     28   1423     82      G
12      7      4   1423    204      G
13    156     80    339   1423      T
14     50   1423    367    142      C
15   1423      9    525     12      R
16    382    401    302    338      m
Binding TFs: RARA (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.