DNA Binding Motif
| Accessions: | MA1620.1 (JASPAR 2024) |
| Names: | Ptf1A, Ptf1a(var.3) |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 12 |
| Consensus: | rmaCACCTGtky |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 2834 2469 2664 2324 r 02 2613 3700 2379 1599 m 03 6867 1188 1410 826 a 04 184 9887 113 107 C 05 10033 60 84 114 A 06 116 8567 1182 426 C 07 256 9612 294 129 C 08 85 94 98 10014 T 09 68 109 9972 142 G 10 527 1615 1516 6633 t 11 1678 2527 3341 2745 k 12 2293 3004 2183 2811 y |
| Type: | Heterodimer |
| Binding TFs: | Q9QX98 (Helix-loop-helix DNA-binding domain) Q9QX98 |
| Binding Sites: | MA1620.1.11 / MA1620.1.14 / MA1620.1.8 MA1620.1.12 / MA1620.1.15 / MA1620.1.9 MA1620.1.13 / MA1620.1.16 / MA1620.1.2 / MA1620.1.4 / MA1620.1.5 / MA1620.1.7 MA1620.1.10 / MA1620.1.3 MA1620.1.1 MA1620.1.17 MA1620.1.18 MA1620.1.19 MA1620.1.2 MA1620.1.20 / MA1620.1.6 MA1620.1.3 MA1620.1.4 MA1620.1.5 MA1620.1.1 / MA1620.1.6 MA1620.1.10 MA1620.1.11 MA1620.1.12 MA1620.1.13 MA1620.1.14 MA1620.1.15 MA1620.1.16 MA1620.1.17 MA1620.1.18 MA1620.1.19 MA1620.1.20 MA1620.1.7 MA1620.1.8 MA1620.1.9 |
| Publications: | Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE. Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Mol Cell Biol 33:3166-79 (2013). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.