DNA Binding Motif

						

			
Accessions: MA0350.1 (JASPAR 2024)

			
Names: TOD6
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: akbcwyasCTCATCGcsyywk
Weblogo: 
PSSM: P0      A      C      G      T
01    362    188    218    230      a
02    144    213    369    273      k
03    101    261    370    266      b
04    239    327    206    226      c
05    369    116    235    278      w
06    212    366    133    288      y
07    649     50     96    203      a
08     67    396    436     98      s
09     20    784    193      1      C
10      2     29     46    921      T
11      2    991      2      3      C
12    975      0      1     21      A
13      1      1     18    978      T
14      0    978      1     18      C
15     52     19    869     57      G
16    135    655    186     22      c
17    181    300    383    135      s
18    232    282    109    376      y
19    187    280    111    421      y
20    306    213    172    308      w
21    201    150    320    327      k
Type: Heterodimer
Binding TFs: P34219 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
P34219
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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