DNA Binding Motif

						

			
Accessions: VSX1_methyl_5 (HT-SELEX2 May2017)

			
Names: VSX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: cTCrTTAw
Weblogo: 
PSSM: P0      A      C      G      T
01   1062   3070   1077   1076      c
02    819    431   1277   6286      T
03   1376   6286    527    759      C
04   4913      0   6286      0      r
05    150    699      0   6286      T
06    491     30     17   6286      T
07   6286      0      0      0      A
08   1864   1237   1545   1641      w
Binding TFs: VSX1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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