DNA Binding Motif

						

			
Accessions: EGR1_methyl_1 (HT-SELEX2 May2017)

			
Names: EGR1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 13
Consensus: cmCrCCCmCgcmc
Weblogo: 
PSSM: P0      A      C      G      T
01    780   1621    639    897      c
02   1485   2452    545    722      m
03    385   3937    129    593      C
04   2518    635   3937   1388      r
05    104   3937     38    103      C
06    208   3937    120    105      C
07    213   3937    225    736      C
08   3937   2333    448    458      m
09      7   3937      0    158      C
10   2119   1295   3937   1977      g
11    493   3937    487   1041      c
12   1970   1967   1328    918      m
13    781   1758    576    821      c
Binding TFs: EGR1 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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