DNA Binding Motif

						

			
Accessions: MA1346.1 (JASPAR 2024), M0225 (AthalianaCistrome v4_May2016)

			
Names: TGA10, T27069;, TGA10.DAP
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ratGmTGACGTCAyy
Weblogo: 
PSSM: P0      A      C      G      T
01    193     72    216    112      r
02    256     90    107    140      a
03    118    122     54    299      t
04     45     53    473     22      G
05    316    200     77      0      m
06      0      0      0    593      T
07      4      0    550     39      G
08    590      0      3      0      A
09      0    559      1     33      C
10      6      0    587      0      G
11     12      5      1    575      T
12     34    505     48      6      C
13    524      0     48     21      A
14     34    258     98    203      y
15    135    184     83    191      y
Type: Heterodimer
Binding TFs: E3VNM4 / T27069 (bZIP transcription factor, Basic region leucine zipper, Seed dormancy control)
E3VNM4
Binding Sites: MA1346.1.2
MA1346.1.5
MA1346.1.4
MA1346.1.3
MA1346.1.14
MA1346.1.1
MA1346.1.19
MA1346.1.7
MA1346.1.6
MA1346.1.15
MA1346.1.12
MA1346.1.9
MA1346.1.10
MA1346.1.8
MA1346.1.11
MA1346.1.13
MA1346.1.16
MA1346.1.17 / MA1346.1.20
MA1346.1.18
			
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.