DNA Binding Motif

						

			
Accessions: EEAD0037 (EEADannot 2023-12-22)

			
Names: ARF34_DYAD3
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 13
Consensus: rrACAtsaTGTyy
Weblogo: 
PSSM: P0      A      C      G      T
01   3550   2107   2349    900      r
02   3272    674   4207    753      r
03   8906      0      0      0      A
04      0   8906      0      0      C
05   8906      0      0      0      A
06   2071   1647   1176   4012      t
07   2179   2274   2274   2179      s
08   4012   1176   1647   2071      a
09      0      0      0   8906      T
10      0      0   8906      0      G
11      0      0      0   8906      T
12    753   4207    674   3272      y
13    900   2349   2107   3550      y
Binding TFs: AuxinResponseFactor34 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.