DNA Binding Motif

						

			
Accessions: RARA_full_1 (HumanTF 1.0)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 15
Consensus: ArGGTCAAAAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   3009    249    574    204      A
02   1216     24   1401      0      r
03      2      1   2998      1      G
04      5      0   2729    430      G
05    147     27     49   2924      T
06      9   4075     20     48      C
07   3548      0     92      1      A
08   3382     20     70    316      A
09   3525     25     19    574      A
10   3297      5    522      0      A
11      2      0   2940      1      G
12      0      2   2812    893      G
13     21     13     16   3106      T
14      2   4029      5    111      C
15   3495      3      1      1      A
Binding TFs: RARA_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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