DNA Binding Motif

						

			
Accessions: CN0002.1 (JASPAR 2024)

			
Names: LM2
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 20
Consensus: rCCACyAGrkGGCAsyrtwg
Weblogo: 
PSSM: P0      A      C      G      T
01   2503    567   3021   1458      r
02    500   6465    189    395      C
03     20   7504      3     22      C
04   6948     73    155    373      A
05    189   5422   1765    173      C
06   1312   2600    222   3415      y
07   6881     57    367    244      A
08     48     15   7475     11      G
09   4548     38   2944     19      r
10     83     46   2985   4435      k
11     68      4   7449     28      G
12    135     98   6428    888      G
13    150   7148     59    192      C
14   6454     59    833    203      A
15    605   2578   4095    271      s
16    804   2556    531   3658      y
17   3745   1458   2052    294      r
18   1468   1098   1837   3146      t
19   2600   1047   1263   2639      w
20   1856    824   3401   1468      g
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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