DNA Binding Motif

						

			
Accessions: UP00094A_1 (UniPROBE 20160601)

			
Names: 9630016P15Rik, MGC113768, mZnf8, Zfp128, zinc finger protein 128
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: khwdkGGCGTACccyaa
Weblogo: 
PSSM: P0      A      C      G      T
01   0.19   0.22   0.26   0.32      k
02   0.29   0.31   0.10   0.30      h
03   0.29   0.16   0.13   0.42      w
04   0.25   0.13   0.28   0.34      d
05   0.22   0.03   0.37   0.39      k
06   0.02   0.01   0.88   0.10      G
07   0.19      0   0.73   0.08      G
08      0   0.99      0   0.01      C
09   0.07      0   0.93      0      G
10      0      0      0   0.99      T
11   0.99      0      0      0      A
12   0.01   0.99      0      0      C
13   0.15   0.62   0.19   0.04      c
14   0.10   0.56   0.11   0.23      c
15   0.18   0.26   0.18   0.38      y
16   0.43   0.22   0.14   0.21      a
17   0.45   0.12   0.22   0.21      a
Binding TFs: UP00094A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: ACGTACGC
AGCGTACG
AGGCGTAC
AGTACGCC
ATGCGTAC
CGTACGCA
CGTACGCC
CGTACGTC
GACGTACC
GCGTACCA
GGACGTAC
GGCGTACA
GGCGTACC
GGGCGTAC
GGTACGAC
GGTACGCA
GTACGACA
GTACGCCA
GTACGTCA
AGTCGTAC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.