DNA Binding Motif

						

			
Accessions: UP00006A_2 (UniPROBE 20160601)

			
Names: Zic3, zinc finger protein of the cerebellum 3, Zinc finger protein ZIC 3
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 15
Consensus: kwdCaCAGCAkGmsa
Weblogo: 
PSSM: P0      A      C      G      T
01   0.23   0.22   0.28   0.27      k
02   0.33   0.18   0.21   0.28      w
03   0.31   0.02   0.39   0.29      d
04   0.10   0.87   0.02   0.01      C
05   0.54   0.09   0.24   0.13      a
06      0   0.97      0   0.02      C
07   0.90   0.02   0.02   0.06      A
08   0.04   0.01   0.95   0.01      G
09      0   0.83   0.01   0.16      C
10   0.72      0   0.22   0.05      A
11   0.01   0.02   0.56   0.40      k
12      0   0.01   0.94   0.04      G
13   0.48   0.27   0.11   0.14      m
14   0.23   0.30   0.26   0.22      s
15   0.37   0.19   0.20   0.25      a
Binding TFs: UP00006A (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: ACAGCGGG
ACCCCCCA
ACCCCCCG
ACCCCCTG
CAGCGGGG
CAGGGGGG
CCAGCGGG
CCAGGGGG
CCCCCCGC
CCCCCCGG
CCCCCGGG
CCCCCTGC
CCCCGCGG
CCCCGGGG
CGGGGGGC
GACCCCCC
GCCCCCCC
GGACCCCC
GGCCCCCC
GGGGGGTA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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