DNA Binding Motif

						

			
Accessions: UP00406A_1 (UniPROBE 20160601)

			
Names: Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, Pse, SAM pointed domain containing ets transcription factor, SAM pointed domain-containing Ets transcription factor, Spdef
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: syrcwwCCGGwwyytb
Weblogo: 
PSSM: P0      A      C      G      T
01   0.22   0.32   0.38   0.08      s
02   0.20   0.35   0.10   0.35      y
03   0.53   0.03   0.41   0.03      r
04   0.08   0.68   0.16   0.09      c
05   0.66   0.01   0.04   0.29      w
06   0.27   0.11   0.07   0.54      w
07   0.07   0.88   0.05      0      C
08   0.06   0.93      0      0      C
09      0      0   0.93   0.06      G
10      0   0.05   0.88   0.07      G
11   0.54   0.07   0.11   0.27      w
12   0.29   0.04   0.01   0.66      w
13   0.21   0.30   0.14   0.34      y
14   0.23   0.38   0.14   0.25      y
15   0.18   0.23   0.24   0.36      t
16   0.09   0.28   0.29   0.34      b
Binding TFs: UP00406A (Ets-domain)
Binding Sites: AAACCGGA
AACCGGAT
ACATCCGG
ACCCGGAT
ACCGGAAC
ACCGGATG
AGATCCGG
AGCCGGAT
ATATCCGG
ATCCGGAA
ATCCGGGA
CATCCGGA
CATCCGGG
CCCGGAAC
CCCGGATA
CCGGATAC
CCGGATCC
CCGGATGC
TATCCGGA
GATCCGGA
			
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.