DNA Binding Motif

						

			
Accessions: RARB_5 (HT-SELEX2 May2017)

			
Names: RARB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: raGGTCAaaAGGTCAm
Weblogo: 
PSSM: P0      A      C      G      T
01    907    169    708    217      r
02   1484    221    517     28      a
03     17      7   2001     39      G
04      3      0   2001    430      G
05     39     82    222   2001      T
06     11   2001     64     89      C
07   2001      0    112      8      A
08   1321    221    188    271      a
09   1279    105    449    168      a
10   1492    125    509     18      A
11     15      7   2001     23      G
12      5      9   2001    520      G
13     64     61    176   2001      T
14     11   2001    103    117      C
15   2001      1    111      4      A
16    610    646    317    428      m
Binding TFs: RARB (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.